BioAlgo

Antumbra launched

mbkursa — Mon, 04 Oct 2010 12:59:30 +0000

We have published beta version of online tool implementing structure-shadow based methods for RNA analysis.

It can be accessed on http://bioinfo.icm.edu.pl/services/antumbra/.

Paper on Boruta package published

mbkursa — Sat, 25 Sep 2010 12:38:55 +0000

Our article “Feature selection with Boruta package” has been published in the Journal Of Statistical Software.

Paper on GPU utilisation for database applications published

mbkursa — Sun, 20 Jun 2010 13:27:32 +0000

Our paper “Exploring utilisation of GPU for database applications” has been published in proceedings of ICCS2010.

Paper on Boruta accepted

mbkursa — Sat, 05 Jun 2010 13:10:20 +0000

Our article “Boruta - a system for feature selection” has been accepted to Fundamenta Informaticae.

Python basics course, first edition 17.03.2010

admin — Thu, 18 Mar 2010 13:23:50 +0000

Our team provides a short, 6 hours, Python training.

The course is an overview of basic language constructions and techniques. Some examples of using packages from the standard Python libraries were also presented, in particular unittest, subprocess, multiprocessing and ctypes.

The Python basics training is a part of a regular courses in the HPC Centre at ICM UW.

All materials and presentations from the first edition are available at:
http://bioinfo.icm.edu.pl/algorithm/source/python_course

Second edition of the course is planned, in the end of April.

The course is open, but the number of places is limited by the capacity
of our laboratory.
The minimal requirement for admission is a working knowledge of at least one
programming language.

For more information go to:http://www.icm.edu.pl/kdm/Witamy or mail to: szkolenia.at.icm.edu.pl

Aptamotif launched

mbkursa — Tue, 29 Dec 2009 21:06:13 +0000

We have published new webservice, Aptamotif, which will deliver access to our motif-finding methods developed for aptamer sequence analysis.

You may reach it on http://bioinfo.icm.edu.pl/services/aptamotif.

Paper on recognising musical instruments published

mbkursa — Sun, 18 Oct 2009 10:15:28 +0000

Article “Musical Instruments in Random Forest” has been published in proceedings of ISMIS2009 conference.

Paper on modelling HIV-1 Revertase resistosome published.

mbkursa — Mon, 05 Oct 2009 12:47:08 +0000

Article “A Rough Set-Based Model of HIV-1 Reverse Transcriptase Resistome” has been published in Bioinformatics and Biology Insights.

Summer Internships 2009

wrudnicki — Tue, 15 Sep 2009 07:51:11 +0000

Traditionally we offered a possibility to participate in our research to outstanding undergraduate students. Seven students of the Faculty of Mathematics Informatics and Mechanics at the University of Warsaw and one student from the Warsaw University of Technology took this opportunity. They are involved in several research projects:

porting of CABS code for de novo protein folding to the CUDA technology
analysis of the satelite images
development of tools for analysis of aptamers

Internship program will be carried out till the end of September.

Hardware grant from NVIDIA

wrudnicki — Tue, 15 Sep 2009 07:49:58 +0000

It is our pleasure to inform that a hardware grant was awarded to our team within NVIDIA Professor Partnership Program.

We have obtained Tesla S1070 server, which has been installed in the bioinformatic minicluster krewetka.

Everyone who is interested in development of CUDA based solutions, in particular in (but not limited to) the field of bioinformatics is requested to get in touch either with Dr Witold Rudnicki or with Mr Łukasz Ligowski